Skip to main content

Generates sequence matches given FNA files and a regex expression

Project description

Genome

Given a list of regex sequences look on FNA files for its match

Usage

python3 main.py data --output csv

Install locally

Requires having pipx and poetry

pipx install poetry
poetry install
genome

Example sequences

Please check the patterns file

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

genome_seq_finder-0.1.0.tar.gz (3.9 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

genome_seq_finder-0.1.0-py3-none-any.whl (5.0 kB view details)

Uploaded Python 3

File details

Details for the file genome_seq_finder-0.1.0.tar.gz.

File metadata

  • Download URL: genome_seq_finder-0.1.0.tar.gz
  • Upload date:
  • Size: 3.9 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.3.2 CPython/3.11.1 Darwin/22.3.0

File hashes

Hashes for genome_seq_finder-0.1.0.tar.gz
Algorithm Hash digest
SHA256 2d5a3ba7275634117dd5e7e397075d7e6e45a5116094b86da4b8150668b19816
MD5 12870a5c0311ec7e1a10570b8365498c
BLAKE2b-256 3d98a410924ab0ca1100a699d7726c98e14a8c82c3b9fd9c811b7a5e6566d2ad

See more details on using hashes here.

File details

Details for the file genome_seq_finder-0.1.0-py3-none-any.whl.

File metadata

  • Download URL: genome_seq_finder-0.1.0-py3-none-any.whl
  • Upload date:
  • Size: 5.0 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: poetry/1.3.2 CPython/3.11.1 Darwin/22.3.0

File hashes

Hashes for genome_seq_finder-0.1.0-py3-none-any.whl
Algorithm Hash digest
SHA256 75861c7ca7e8b9caaaebac819dbf0997a7093686eb71525bf50d74e6371c8908
MD5 40b545b67e0116467ea1520e3af33937
BLAKE2b-256 63349d8a5db85bf4f816c6ef9c7d7c9b437e7a15329314c43701733502a7f774

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page