Experimental Python Bindings for querying GenomicsDB

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Project description

GenomicsDB-Python

Experimental Python 3 Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb or gatk GenomicsDBImport.

Installation : Only Linux and MacOS are currently supported

Install genomicsdb binary wheels from PyPi with pip:

pip install genomicsdb

Or explicitly from a source distribution

# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install

Development

See instructions for local builds and running tests.

Project details

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

This version

0.0.9.12

May 7, 2024

0.0.9.11

Apr 18, 2024

0.0.9.10

Feb 28, 2024

0.0.9.9

Feb 27, 2024

0.0.9.8

Feb 10, 2024

0.0.9.7

Jan 10, 2024

0.0.9.6

Dec 13, 2023

0.0.9.5

Dec 13, 2023

0.0.9.4

Dec 7, 2023

0.0.9.3

Nov 17, 2023

0.0.9.2

Oct 10, 2023

0.0.9.1

Oct 4, 2023

0.0.9.0

Oct 3, 2023

0.0.8.0

Oct 2, 2023

0.0.7.0

Jul 10, 2020

0.0.6.4

May 29, 2020

0.0.6.1

May 29, 2020

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Source Distributions

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Built Distributions

genomicsdb-0.0.9.12-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.12 manylinux: glibc 2.17+ x86-64

genomicsdb-0.0.9.12-cp312-cp312-macosx_12_0_x86_64.whl (6.4 MB view hashes)

Uploaded May 7, 2024 CPython 3.12 macOS 12.0+ x86-64

genomicsdb-0.0.9.12-cp312-cp312-macosx_12_0_arm64.whl (5.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.12 macOS 12.0+ ARM64

genomicsdb-0.0.9.12-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.11 manylinux: glibc 2.17+ x86-64

genomicsdb-0.0.9.12-cp311-cp311-macosx_12_0_x86_64.whl (6.4 MB view hashes)

Uploaded May 7, 2024 CPython 3.11 macOS 12.0+ x86-64

genomicsdb-0.0.9.12-cp311-cp311-macosx_12_0_arm64.whl (5.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.11 macOS 12.0+ ARM64

genomicsdb-0.0.9.12-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.10 manylinux: glibc 2.17+ x86-64

genomicsdb-0.0.9.12-cp310-cp310-macosx_12_0_x86_64.whl (6.4 MB view hashes)

Uploaded May 7, 2024 CPython 3.10 macOS 12.0+ x86-64

genomicsdb-0.0.9.12-cp310-cp310-macosx_12_0_arm64.whl (5.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.10 macOS 12.0+ ARM64

genomicsdb-0.0.9.12-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (9.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.9 manylinux: glibc 2.17+ x86-64

genomicsdb-0.0.9.12-cp39-cp39-macosx_12_0_x86_64.whl (6.4 MB view hashes)

Uploaded May 7, 2024 CPython 3.9 macOS 12.0+ x86-64

genomicsdb-0.0.9.12-cp39-cp39-macosx_12_0_arm64.whl (5.7 MB view hashes)

Uploaded May 7, 2024 CPython 3.9 macOS 12.0+ ARM64

Hashes for genomicsdb-0.0.9.12-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl

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