Experimental Python Bindings to GenomicsDB

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Project description

GenomicsDB-Python

Experimental Python Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb or gatk GenomicsDBImport.

Installation

On Linux and macOS, install genomicsdb from PyPi with pip:

pip install genomicsdb

Development

See instructions for local builds and running tests.

Project details

These details have not been verified by PyPI

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Release history Release notifications | RSS feed

0.0.9.13

May 13, 2024

0.0.9.12

May 7, 2024

0.0.9.11

Apr 18, 2024

0.0.9.10

Feb 28, 2024

0.0.9.9

Feb 27, 2024

0.0.9.8

Feb 10, 2024

0.0.9.7

Jan 10, 2024

0.0.9.6

Dec 13, 2023

0.0.9.5

Dec 13, 2023

0.0.9.4

Dec 7, 2023

0.0.9.3

Nov 17, 2023

0.0.9.2

Oct 10, 2023

0.0.9.1

Oct 4, 2023

0.0.9.0

Oct 3, 2023

0.0.8.0

Oct 2, 2023

This version

0.0.7.0

Jul 10, 2020

0.0.6.4

May 29, 2020

0.0.6.1

May 29, 2020

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Source Distribution

genomicsdb-0.0.7.0.tar.gz (15.0 MB view hashes)

Uploaded Jul 10, 2020 Source

Built Distributions

genomicsdb-0.0.7.0-cp38-cp38-manylinux1_x86_64.whl (12.5 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.8

genomicsdb-0.0.7.0-cp38-cp38-macosx_10_9_x86_64.whl (12.2 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.8 macOS 10.9+ x86-64

genomicsdb-0.0.7.0-cp37-cp37m-manylinux1_x86_64.whl (12.5 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.7m

genomicsdb-0.0.7.0-cp37-cp37m-macosx_10_9_x86_64.whl (12.2 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.7m macOS 10.9+ x86-64

genomicsdb-0.0.7.0-cp36-cp36m-manylinux1_x86_64.whl (12.5 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.6m

genomicsdb-0.0.7.0-cp36-cp36m-macosx_10_9_x86_64.whl (12.2 MB view hashes)

Uploaded Jul 10, 2020 CPython 3.6m macOS 10.9+ x86-64

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