Experimental Python Bindings for querying GenomicsDB
Project description
GenomicsDB-Python
Experimental Python 3 Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb
or gatk GenomicsDBImport
.
Installation : Only Linux and MacOS are currently supported
Install genomicsdb
binary wheels from PyPi with pip:
pip install genomicsdb
Or explicitly from a source distribution
# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install
Development
See instructions for local builds and running tests.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
genomicsdb-0.0.9.2.tar.gz
(22.5 MB
view hashes)
Built Distributions
Close
Hashes for genomicsdb-0.0.9.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0426be022b3cb6a19177da6fc56848a5c4b6ef78162ebb3853c30dca695a21ab |
|
MD5 | 9bb2774cab4b72a0140ac8d178f31ff3 |
|
BLAKE2b-256 | fa962c1ddd8999c6b2f814f70a4c518502cbc8f95c2fdfb7d18d6fe0fc475bab |
Close
Hashes for genomicsdb-0.0.9.2-cp311-cp311-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0385545f6648f4aef27401050d2ebbc4dcd47a67ec1caef8fcbca851b5941fcc |
|
MD5 | cb4d11d3f9de018533eab17d219071f4 |
|
BLAKE2b-256 | 7c7993f16cf3d15dc1854c74dfa1cdf8ab3854d015aea2c4cee06e6d55795aeb |
Close
Hashes for genomicsdb-0.0.9.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 39dffd79be0979ed638941fa776eae78d6221ec9dfcf739f2fa60f3800321c59 |
|
MD5 | a80fd61313c293f5ff69802f923c7195 |
|
BLAKE2b-256 | 5b84a170b27fccc298df1d51809069f9c5faa1db11cfd8f8780b1e4440d30246 |
Close
Hashes for genomicsdb-0.0.9.2-cp310-cp310-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0a8ef624bc541ac62e8c238675b137995c13bcd9a2f07ac4c043fbe3a6cf4576 |
|
MD5 | 4629d13fcabd4e1decc59848363d88fd |
|
BLAKE2b-256 | 7e28871be91cfe37834c359e94ee52ae5f99540e414c53ea08b340c058e256eb |
Close
Hashes for genomicsdb-0.0.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 0f5add55a63dc87e03a21926e81c5da1188a51dab27d5d5aa40a5f2322553382 |
|
MD5 | 5587afd555fcf3ad5cdf670c6af27486 |
|
BLAKE2b-256 | bfcfee4ba1a1ce99b767af15036908809cea318a6dbc7cf653fdc0acd1090a35 |
Close
Hashes for genomicsdb-0.0.9.2-cp39-cp39-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 65b466ae0f3d8c71dd2cd07231a33c7fbbdd331a93e6d05a5bddffc6463973ab |
|
MD5 | 240f4ec0676aec1ea5751122fce0dd07 |
|
BLAKE2b-256 | 3ee5e05abfc31716cc242b3a67059868e109011bca71ff1fb2bf5e5fea757cea |