Experimental Python Bindings for querying GenomicsDB
Project description
GenomicsDB-Python
Experimental Python 3 Bindings to the native GenomicsDB library. Only queries are supported for now. For importing vcf files into GenomicsDB, use the command line tools - vcf2genomicsdb
or gatk GenomicsDBImport
.
Installation : Only Linux and MacOS are currently supported
Install genomicsdb
binary wheels from PyPi with pip:
pip install genomicsdb
Or explicitly from a source distribution
# Download the source distribution from https://pypi.org/project/genomicsdb/#files as genomicsdb.source.tar.gz
tar xvf genomicsdb.source.tar.gz
cd genomicsdb-<version>
python setup.py install
Development
See instructions for local builds and running tests.
Project details
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
genomicsdb-0.0.9.7.tar.gz
(3.0 MB
view hashes)
Built Distributions
Close
Hashes for genomicsdb-0.0.9.7-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | c8fc5fb50d9d8c02b8f7c5a8e77c1881673de08bf096cd3ec6a82a48107fc85d |
|
MD5 | 74b9e8a2f4b915b82c175770765b4ba5 |
|
BLAKE2b-256 | 502606256fc2ace6c3c1687bbfcdcb1f4d33d01823b94c8498083afc2ea18d04 |
Close
Hashes for genomicsdb-0.0.9.7-cp312-cp312-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 7a7e56cb11a1db068974a9aaa35683b0dadcd108e2909178f039422c3a9ae844 |
|
MD5 | 405664077bf9c3db6282693f836f0ece |
|
BLAKE2b-256 | afcc3e5ec627338724740dd17d860bf51fb5c2481913d5c4e626f4200dd962eb |
Close
Hashes for genomicsdb-0.0.9.7-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | c12bec15c8df9bd2c17633ec870d95c33ea249d84c8ac1374d025695734bf606 |
|
MD5 | 81d38c384731a8eaef9743e5cdb6d1e4 |
|
BLAKE2b-256 | e92d27638c57d09b279b57cb117c5b02babd45af96d1e608293785e29bc18955 |
Close
Hashes for genomicsdb-0.0.9.7-cp311-cp311-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 36799849e3fbc499aec0e978ef944891c01c691787fb7aa526b993bef9eaebbf |
|
MD5 | 37665361a86a676be6275465c4807005 |
|
BLAKE2b-256 | 3d23bc532e604e8c2b5c62a8f821369221d24a670107a93db49c0f995893067c |
Close
Hashes for genomicsdb-0.0.9.7-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 60f6f271380dfeccb3ac358768b1f8b7a617baf11f957c35b27805b5ecfe065a |
|
MD5 | 9c1f0679d283f522f2fe1da78535b54e |
|
BLAKE2b-256 | 4b582ddcacf281c7b657aef92a5aebec3beba69e98929406efd37e0053dd69ac |
Close
Hashes for genomicsdb-0.0.9.7-cp310-cp310-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 660ce83781289915357dd232293556afd45d05f84808bbda8b37f932a3935fdc |
|
MD5 | 48f01e70ec1b9c6705d80a7962d6bbe3 |
|
BLAKE2b-256 | b65f071200e26c20e9b767b8dbf03a62a85761c1db5f59e6bca1a2795f9e6872 |
Close
Hashes for genomicsdb-0.0.9.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 58e953ee6774453d6e36d01bd82ecd0d83da7987ef7cdec2eb34ab57b75f0e39 |
|
MD5 | 7c6ec4b89a5cbccdf5eee7235c3f85ec |
|
BLAKE2b-256 | 586714c4d320b838ee93434e9ab7e7372f47538c16076d2b039d1e1407138e78 |
Close
Hashes for genomicsdb-0.0.9.7-cp39-cp39-macosx_12_0_x86_64.whl
Algorithm | Hash digest | |
---|---|---|
SHA256 | 1d2ba02d853fb021a82b77364aee041b120257a2eb2a68a63b38c5a74052412d |
|
MD5 | 6070f78d92c0d5720c0c76c988d37a23 |
|
BLAKE2b-256 | 5cc0ed7788bb6fc3a15851d6a35c25cef355f72522c88056e6787bc6a381b98b |