get-some-ncbi-genomes
Installation
pip install get-some-ncbi-genomes
Usage
Download one or more NCBI genomes, given accession.
Build a CSV file containing download info:
get-some-ncbi-genomes GCA_002440745.1 --csv xyz.csv
Download the genome files directly:
get-some-ncbi-genomes --output-dir genomes/ --download-genomes GCA_002440745.1
Use the sourmash plugin to download genome files and make an info.csv:
sourmash scripts get-genomes GCA_002440745.1
Support
We suggest filing issues in the main sourmash issue tracker as that receives more attention!
Dev docs
get-some-ncbi-genomes is developed at https://github.com/ctb/get-some-ncbi-genomes/
Testing
Run:
pytest tests
Generating a release
Bump version number in pyproject.toml and push.
Make a new release on github.
Then pull, and:
python -m build
followed by twine upload dist/....
1 maintainer
Metadata
1 maintainer
Release files for get-some-ncbi-genomes 0.3.3
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| get_some_ncbi_genomes-0.3.3.tar.gz | 5.7 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| get_some_ncbi_genomes-0.3.3-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 11.6 kB
Release files / get_some_ncbi_genomes-0.3.3.tar.gz
| Download URL | get_some_ncbi_genomes-0.3.3.tar.gz |
|---|---|
| Size | 5.7 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.11.8
|
Release files / get_some_ncbi_genomes-0.3.3-py3-none-any.whl
| Download URL | get_some_ncbi_genomes-0.3.3-py3-none-any.whl |
|---|---|
| Size | 6.0 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
twine/6.0.1 CPython/3.11.8
|
