download one or more NCBI genomes by accession
Project description
get-some-ncbi-genomes
Installation
pip install get-some-ncbi-genomes
Usage
Download one or more NCBI genomes, given accession.
Build a CSV file containing download info:
get-some-ncbi-genomes GCA_002440745.1 --csv xyz.csv
Download the genome files directly:
get-some-ncbi-genomes --output-dir genomes/ --download-genomes GCA_002440745.1
Use the sourmash plugin to download genome files and make an info.csv:
sourmash scripts get-genomes GCA_002440745.1
Support
We suggest filing issues in the main sourmash issue tracker as that receives more attention!
Dev docs
get-some-ncbi-genomes is developed at https://github.com/ctb/get-some-ncbi-genomes/
Testing
Run:
pytest tests
Generating a release
Bump version number in pyproject.toml and push.
Make a new release on github.
Then pull, and:
python -m build
followed by twine upload dist/....
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file get_some_ncbi_genomes-0.3.3.tar.gz.
File metadata
- Download URL: get_some_ncbi_genomes-0.3.3.tar.gz
- Upload date:
- Size: 5.7 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.0.1 CPython/3.11.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
db6e812d069878f016d9311e24260fd25c3df4909682ca29b789edf9b7d321da
|
|
| MD5 |
ab181e925c4a4ffe241aae166006f621
|
|
| BLAKE2b-256 |
f4dcf1da667dc675f9c34c5c5c83335454bdf9c26cd81f9b4b6d11edda59a077
|
File details
Details for the file get_some_ncbi_genomes-0.3.3-py3-none-any.whl.
File metadata
- Download URL: get_some_ncbi_genomes-0.3.3-py3-none-any.whl
- Upload date:
- Size: 6.0 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.0.1 CPython/3.11.8
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
eb186b1b7dafe3a26bcc8a2ebdb41660b4fabe27598031de692e5bf30db3e1d3
|
|
| MD5 |
a76eb7a5a5c5563dd39ef2828a2c3596
|
|
| BLAKE2b-256 |
5893d9db3b7c3f41636ec4e227d8bb13113157475ee7afdc81d68d8ff6c35008
|
