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Titus Brown

Username    titus

27 projects

dinkum-bio

Last released

directed interaction network kit for modeling, focused on GRNs

twill

Last released

A web browsing and testing language

oxli

Last released

sourmash-plugin-betterplot

Last released

sourmash plugin for improved plotting/viz and cluster examination.

sourmash-plugin-branchwater

Last released

fast command-line extensions for sourmash

sourmash-plugin-venn

Last released

sourmash plugin to build venn diagrams - DEPRECATED. Use 'sourmash_plugin_betterplot' instead.

sourmash

Last released

tools for comparing biological sequences with k-mer sketches

sourmash-plugin-containment-search

Last released

sourmash plugin for improved output of containment search for metagenomes

sourmash-plugin-pangenomics

Last released

sourmash plugin to do pangenomics.

sourmash-utils

Last released

Python utilities for sourmash plugins and scripts

screed

Last released

a Python library for loading FASTA and FASTQ sequences

pyo3-branchwater

Last released

fast search and gather extensions for sourmash

sourmash-plugin-commonhash

Last released

sourmash plugin to calculate common hashes across multiple sketches.

sourmash-plugin-abundhist

Last released

sourmash plugin to calculate abundance profiles.

sourmash-mixers

Last released

this meta-package installs a collection of sourmash plugins!

sourmash-plugin-sketchall

Last released

sourmash plugin to sketch many sequence files

get-some-ncbi-genomes

Last released

download one or more NCBI genomes by accession

genome-grist

Last released

tools to support genome and metagenome analysis

spacegraphcats

Last released

tools for biological assembly graph neighborhood analysis

ribbity

Last released

convert github issues into a mkdocs site

pinocchio

Last released

pinocchio plugins for the nose testing framework

bbhash

Last released

A Python wrapper for the BBHash Minimal Perfect Hash Function

khmer

Last released

khmer k-mer counting library

syrah

Last released

extract trusted k-mers from raw sequencing data

buoy

Last released

figleaf

Last released

figleaf code coverage tool

session2

Last released

Persistent sessions for Quixote 2.x

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