Library to parse, edit and handle in memory GFA graphs

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GFAGraphs - A Python GFA library

This Python library aims to be an abstraction layer for GFA file format.

[!WARNING]
gfagraphs is not actively maintained as I moved to Rust for my main research work. However, as the library is used in some projects, the library remains available as is.

Package gfagraphs

The package is organized in 4 modules:

  • gfagraphs.abstractions contains abstractions over GFA formats
  • gfagraphs.gfaparser contains an abstract class for parsing and saving GFA file format
  • gfagraphs.graph contains the main Graph class that represents a GFA graph in memory, and edit functions
  • gfagraphs.networkx conains an abstract class for visualization and modelization of GFA in a NetworkX object

[!NOTE]
Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!

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