gfagraphs 0.2.15

Library to parse, edit and handle in memory GFA graphs

GFAGraphs - A Python GFA library

This Python library aims to be an abstraction layer for GFA file format. Two implementations are proposed:

• a legacy one, which will remain until deprecated, in gfagraphs/
• a new, cleaner and faster implementation, in pgGraphs/

[!WARNING]
Moving forward, features will only be added to pgGraphs, while gfagraphs will remain as it, until full migration is done in pancat tool.

Package pgGraphs

The package is organized in 4 modules:

• pgGraphs.abstractions contains abstractions over GFA formats
• pgGraphs.gfaparser contains an abstract class for parsing and saving GFA file format
• pgGraphs.graph contains the main Graph class that represents a GFA graph in memory, and edit functions
• pgGraphs.networkx conains an abstract class for visualization and modelization of GFA in a NetworkX object

[!NOTE]
Want to contribute? Feel free to open a PR on an issue about a missing, buggy or incomplete feature!