Various genomics tools and scripts used in the GHFC lab
Project description
ghfc-utils
set of small tools designed to help automatize simple task locally or on Pasteur's cluster.
- slivar-reannotate for the postprocessing of slivar files including filtering and geneset reannotation.
- slivar-dnm for the computation of a prediction score about the veracity of de novo mutations
Installation
pip install ghfc-utils
PS. on maestro, do not forget to load Python first (not needed anymore once installed):
module load Python/3.9.16
Installation using uv
TODO
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