gotoh
To install, run:
pip install gotohThis package performs a global sequence alignment (Needleman-Wunsch) with affine gap penalties (Gotoh). It returns a tuple with the number of characters that match, mismatch, open gaps and extend gaps. The scores/penalties are given as arguments and the defaults correspond to the basic Levenshtein distance.
It can also produce a multiple sequence alignment.
Documentation and code clean up to come.
Credits
Based on Brent Pedersen’s nwalign which was originally posted at https://bitbucket.org/brentp/biostuff/ but now has disappeared.
For more information, see Robert Turnbull’s book Codex Sinaiticus Arabicus and Its Family.
1 maintainer
Metadata
1 maintainer
Release files for gotoh 0.2.0
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Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| gotoh-0.2.0.tar.gz | 134.4 kB | Without provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| gotoh-0.2.0-cp311-cp311-macosx_26_0_arm64.whl | CPython 3.11 | CPython 3.11 | macOS 26.0+ ARM64 | Details |
Total release size: 334.8 kB
Release files / gotoh-0.2.0.tar.gz
| Download URL | gotoh-0.2.0.tar.gz |
|---|---|
| Size | 134.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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Release files / gotoh-0.2.0-cp311-cp311-macosx_26_0_arm64.whl
| Download URL | gotoh-0.2.0-cp311-cp311-macosx_26_0_arm64.whl |
|---|---|
| Size | 200.4 kB |
| Tags | CPython 3.11 macOS 26.0+ ARM64 |
|
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poetry/2.1.1 CPython/3.13.1 Darwin/25.4.0
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