26 projects
gotoh
Sequence Alignment with different penalties for opening gaps and extending them.
msstools
Tools for Managing the Manuscripts
bio-terrier
Transposable Element Repeat Result classifIER
bio-corgi
Classifier for ORganelle Genomes Inter alia
torchapp
A wrapper for PyTorch projects to create easy command-line interfaces and manage hyper-parameter tuning.
teiphy
Converts TEI XML collations to NEXUS and other formats
hespi
HErbarium Specimen sheet PIpeline
llmloader
Loads a Langchain LLM by model name as a string.
rdgai
Rdgai facilitates the use of LLMs for classifying transitions between variant readings in a Text Encoding Initiative (TEI) XML file containing a critical apparatus.
WiDiT
Windowed Diffusion Transformer in 2D and 3D
psyop
Parameter Space Yield Optimizer
cluey
Build clever, class-based command line apps with minimal boilerplate.
hierarchicalsoftmax
A Hierarchical Softmax Framework for PyTorch.
PolyTorch
Embeddings and loss functions for different data types.
drawyolo
Draws boxes on images from annotations in YOLO format
django-imagedeck
A package to seamlessly group different sorts of images into groups.
djangocms-themata
A set of themes for Django CMS projects.
seqbank
A database to quickly read and write DNA sequence data in numerical form.
vorlagellm
Uses an LLM to determine which were plausible readings in the Vorlage of a translation of a text.
orthoflow
A phylogenomic workflow
ausdex
A Python package for adjusting Australian dollars for inflation
django-crunch
A data processing orcestration tool.
pybtexnbib
A pybtex plugin for NBIB/Medline/PubMed files
pybtexris
A pybtex plugin for working with RIS files.
dcodex
A software framework for manuscript analysis
django-authanon
Allows permissions for an anonymous user and a generic signed-in user to be set as groups.
