groundworkers 0.3.2

Groundworkers MCP server — read-only agentive access to OMOP vocabularies, concept graphs, and embeddings.

groundworkers

groundworkers is the reusable capability layer for OMOP-grounded lookup, mapping, source planning, and knowledge-pack discovery.

You can use it in three ways:

• as an MCP service for agentic clients and tool discovery
• as a REST service for fixed workflow applications
• as a direct Python library for in-process orchestration

No patient-level writes. No session state. No transport-specific business logic.

What it provides

• OMOP concept lookup and hierarchy navigation
• exact, normalized, full-text, and embedding-backed retrieval
• mapping-oriented candidate bundles and context assembly
• stateless source-planning workflows
• LLM-backed text normalization and domain classification

Runtime model

flowchart TD
    STACK[shared stack config] --> BOOT[build_app_config]
    BOOT --> CFG[AppConfig]
    CFG --> APP[build_application]
    APP --> GW[GroundworkersApp]
    GW --> SVC[services]
    GW --> ADP[adapters]
    MCP[MCP client] --> TOOLS[MCP tools]
    REST[REST client] --> API[REST transport]
    PY[Python caller] --> SVC
    TOOLS --> SVC
    TOOLS -. adapter-backed primitives .-> ADP
    API --> SVC

build_application(...) is the composition root. It builds one reusable runtime container with transport-agnostic services plus dependency-facing adapters. Most caller-facing workflows go through services; some MCP tools are intentionally adapter-backed when the capability is closer to a backend primitive than a domain service.

Quick start

Install

pip install groundworkers

Optional extras:

pip install "groundworkers[llm,embedding-pgvector]"

Configure the shared stack

omop-config configure omop_alchemy
omop-config configure omop_graph
omop-config configure groundworkers
# optional if you want embedding-backed capabilities
omop-config configure omop_emb

Start MCP

groundworkers --describe
groundworkers --transport streamable-http --host 0.0.0.0 --port 8000

Start REST

groundworkers --transport rest --host 0.0.0.0 --port 8080

Use from Python

from groundworkers.app import build_application
from groundworkers.bootstrap import build_app_config

config = build_app_config()
app = build_application(config)

mapping = app.services.mapping
bundle = mapping.concept_candidate_bundle(
    "type 2 diabetes",
    domain="Condition",
    include_normalized=True,
    include_fulltext=True,
    include_embedding=True,
)

Main surfaces

Surface	Best for
MCP tools	Tool discovery, agent interoperability, shared capability services
REST routes	Typed HTTP workflows such as candidate bundles and assisted source planning
app.services.*	In-process Python applications and batch workflows
app.adapters.*	Backend wrappers used when you intentionally need dependency-shaped primitives

Learn more

• Docs home: docs/index.md
• Configuration: docs/usage/configuration.md
• Integrations: docs/usage/integrations.md
• Architecture: docs/architecture.md

Companion repos

• groundcrew
• omop-graph
• omop-emb