Skip to main content

A tool to convert GWAS TSV files to VCF format

Project description

The tool gwas2vcf can convert GWAS results files, like the .tsv.bgz files from UK Biobank studies, into the standard VCF 4.0 format.

For best results, it's recommended to create a virtual environment with Python 3.11.6, as that's the version this tool was tested with.

USAGE:: $ gwas2vcf -i INPUT -o OUTPUT

For help:: $ gwas2vcf -h

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

gwas2vcf-0.1.9.tar.gz (3.0 kB view details)

Uploaded Source

Built Distribution

If you're not sure about the file name format, learn more about wheel file names.

gwas2vcf-0.1.9-py3-none-any.whl (3.3 kB view details)

Uploaded Python 3

File details

Details for the file gwas2vcf-0.1.9.tar.gz.

File metadata

  • Download URL: gwas2vcf-0.1.9.tar.gz
  • Upload date:
  • Size: 3.0 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.11.6

File hashes

Hashes for gwas2vcf-0.1.9.tar.gz
Algorithm Hash digest
SHA256 cbf4146500f272674c89afa52d4be28844fa4afa841f00602be9556df5cea02d
MD5 c605a7fbc31555d2b3b08d4190b54a3c
BLAKE2b-256 4c756ad7c730ca9905a0c0b71aa28dcaf5b7825c1597e1fba743be0212f4c954

See more details on using hashes here.

File details

Details for the file gwas2vcf-0.1.9-py3-none-any.whl.

File metadata

  • Download URL: gwas2vcf-0.1.9-py3-none-any.whl
  • Upload date:
  • Size: 3.3 kB
  • Tags: Python 3
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/5.1.0 CPython/3.11.6

File hashes

Hashes for gwas2vcf-0.1.9-py3-none-any.whl
Algorithm Hash digest
SHA256 37db237d92f171ba4aa8317a08fb091d687cc8d35e73a4c25e899f377ac16607
MD5 8cc32a9efa2970082da8bf24f5483911
BLAKE2b-256 77f41ffb4dccb2914e5855a3a9c6e4ebfca21736f68988f040fc10a6659050b5

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page