Skip to main content

Visualise genomics data fast

Project description

gwplot

gwplot is a plotting library for genomics data and a Python interface to GW, a high-performance interactive genome browser.

Visit the documentation for more details

Build Status

Installation

pip install gwplot

Quick Start

from gwplot import Gw

# Initialise with reference genome
gw = Gw("reference.fa")

# Add data sources
gw.add_bam("sample.bam")
gw.add_track("variants.vcf")

# Set region to view
gw.add_region("chr1", 1000000, 1100000)

# Render and save
gw.save_png("output.png")

Contributing

Contributions are welcome! Please feel free to submit a Pull Request.

License

MIT License

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distributions

No source distribution files available for this release.See tutorial on generating distribution archives.

Built Distributions

If you're not sure about the file name format, learn more about wheel file names.

gwplot-0.4.1-cp313-cp313-manylinux_2_28_x86_64.whl (66.4 MB view details)

Uploaded CPython 3.13manylinux: glibc 2.28+ x86-64

gwplot-0.4.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (71.5 MB view details)

Uploaded CPython 3.13manylinux: glibc 2.17+ x86-64

gwplot-0.4.1-cp313-cp313-macosx_15_0_arm64.whl (27.0 MB view details)

Uploaded CPython 3.13macOS 15.0+ ARM64

gwplot-0.4.1-cp313-cp313-macosx_13_0_x86_64.whl (31.1 MB view details)

Uploaded CPython 3.13macOS 13.0+ x86-64

gwplot-0.4.1-cp312-cp312-manylinux_2_28_x86_64.whl (66.4 MB view details)

Uploaded CPython 3.12manylinux: glibc 2.28+ x86-64

gwplot-0.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (71.5 MB view details)

Uploaded CPython 3.12manylinux: glibc 2.17+ x86-64

gwplot-0.4.1-cp312-cp312-macosx_15_0_arm64.whl (27.0 MB view details)

Uploaded CPython 3.12macOS 15.0+ ARM64

gwplot-0.4.1-cp312-cp312-macosx_13_0_x86_64.whl (31.1 MB view details)

Uploaded CPython 3.12macOS 13.0+ x86-64

gwplot-0.4.1-cp311-cp311-manylinux_2_28_x86_64.whl (66.4 MB view details)

Uploaded CPython 3.11manylinux: glibc 2.28+ x86-64

gwplot-0.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (71.6 MB view details)

Uploaded CPython 3.11manylinux: glibc 2.17+ x86-64

gwplot-0.4.1-cp311-cp311-macosx_15_0_arm64.whl (27.0 MB view details)

Uploaded CPython 3.11macOS 15.0+ ARM64

gwplot-0.4.1-cp311-cp311-macosx_13_0_x86_64.whl (31.1 MB view details)

Uploaded CPython 3.11macOS 13.0+ x86-64

gwplot-0.4.1-cp310-cp310-manylinux_2_28_x86_64.whl (66.4 MB view details)

Uploaded CPython 3.10manylinux: glibc 2.28+ x86-64

gwplot-0.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (71.5 MB view details)

Uploaded CPython 3.10manylinux: glibc 2.17+ x86-64

gwplot-0.4.1-cp310-cp310-macosx_15_0_arm64.whl (27.0 MB view details)

Uploaded CPython 3.10macOS 15.0+ ARM64

gwplot-0.4.1-cp310-cp310-macosx_13_0_x86_64.whl (31.1 MB view details)

Uploaded CPython 3.10macOS 13.0+ x86-64

gwplot-0.4.1-cp39-cp39-macosx_15_0_arm64.whl (27.0 MB view details)

Uploaded CPython 3.9macOS 15.0+ ARM64

gwplot-0.4.1-cp39-cp39-macosx_13_0_x86_64.whl (31.1 MB view details)

Uploaded CPython 3.9macOS 13.0+ x86-64

File details

Details for the file gwplot-0.4.1-cp313-cp313-manylinux_2_28_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp313-cp313-manylinux_2_28_x86_64.whl
Algorithm Hash digest
SHA256 b8e5b0964df3850140f0d2ac15f048754ba21c1c8e438d374732d0d639ae215d
MD5 705285f748fceda56d9b2853bdbac6f6
BLAKE2b-256 aeeff0dd14347136eca33775389db4769ce0391406b0d2b286591e2a13d540d1

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp313-cp313-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 74261e269e41de3e80ec229614aac5271f6795e395f671f183011912783517e0
MD5 be657bc2557589c8e39a1874e17f0a57
BLAKE2b-256 e17c5be79230eb84b4533b647598cf9306dc77d520cb07d3d49263fd1269072a

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp313-cp313-macosx_15_0_arm64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp313-cp313-macosx_15_0_arm64.whl
Algorithm Hash digest
SHA256 8f804ada309bdafd050ffdcb335debe42b6a81bfa3e41e0e67aed9c569f302d9
MD5 9de0635f73be23b559450d14752ec0ce
BLAKE2b-256 42e5b8d63472bc64a7e358c16cb52ac1c41aa2c44c4a5823fe800217183a7fdc

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp313-cp313-macosx_13_0_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp313-cp313-macosx_13_0_x86_64.whl
Algorithm Hash digest
SHA256 8ab97c4fc9589493f1b6d2fda49fc7cc93e10d7e636ae2c5494b5a8c14d115d1
MD5 dca179fe53d131fe4569b96a05871ae8
BLAKE2b-256 7cb1dfc7323bf9fea2dd6a91f11150dd82843d5e89c15d91120eca699a622ea5

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp312-cp312-manylinux_2_28_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp312-cp312-manylinux_2_28_x86_64.whl
Algorithm Hash digest
SHA256 a5f10b0e2b01c121f07dd9c29ce32fc75141382b7a9a75be7aa9c36a7c9560c5
MD5 79f64f1e42b666b7599fb599dbf82dc8
BLAKE2b-256 29a4734d31842bbfd906fd1672c130ef06b4c06596ef6251d8349cc97a552e1d

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp312-cp312-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 84cdf10372a091c8fb80e04f8fd27c850ae7884956193c2b97b365dead923c66
MD5 099240538b48c0d71e2746bdaaffbfc2
BLAKE2b-256 e65601b0ba563d660443509136f488a8a24480d56018a3037d3515c05acba7d5

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp312-cp312-macosx_15_0_arm64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp312-cp312-macosx_15_0_arm64.whl
Algorithm Hash digest
SHA256 04048fec64a21a0cff027a9d4e57add75bf9040b2bbe29c3548d5ba9f2539fe9
MD5 5f72d217a1c4169b42ba24015a2f557b
BLAKE2b-256 451749e9ebcacdbee485b5fff509647d068d96254650d43402a04cd8b751063e

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp312-cp312-macosx_13_0_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp312-cp312-macosx_13_0_x86_64.whl
Algorithm Hash digest
SHA256 c34d0e4425705ca2a53706297a980b511155993440e2d0a474c92c81e1a0cb31
MD5 cf05eb81d13cb2c110cbf124b3d53f46
BLAKE2b-256 98bf26a8a4ad9c5315fc009214e8cf2621d9fa814a21524cac9e633b3a11f048

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp311-cp311-manylinux_2_28_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp311-cp311-manylinux_2_28_x86_64.whl
Algorithm Hash digest
SHA256 79374ef51ed14a127d79af6d215377af993346257d3e0335328cc644f6baeb27
MD5 c5a8bc598f8243a9c7fd12d7bb742dba
BLAKE2b-256 bbd9671733674e61f9660e69811f0c53be5cb3d5a6637ca22f3dfd2e62b9910a

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 c6d2a4fb16ba38d1c0e9c90c08305f384ad50353eacedae6b68a66fdc37cff00
MD5 ac2cec54f64043ba0e817e0974854a95
BLAKE2b-256 7dd2a57a84338ac871110fbc82fd9d9eade4ba4aab3a9eac22da5e53d6ac9f25

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp311-cp311-macosx_15_0_arm64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp311-cp311-macosx_15_0_arm64.whl
Algorithm Hash digest
SHA256 d21b3490de81ef03238de9bf23afe6152ceaa5c41da23e64660a94159ad95350
MD5 ab15a9bc4a2038641883f7f52ebaa47f
BLAKE2b-256 a7199ac7ff174acfc4abbd9e1d6c2706af0957fc166eadefaf2fc9c08b23a50f

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp311-cp311-macosx_13_0_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp311-cp311-macosx_13_0_x86_64.whl
Algorithm Hash digest
SHA256 151208e9b4cf6d82a4dc7cc122dfb05b3cc58009a52c09dfdb4fe0ca9255b888
MD5 11cbde8bbfacf5192cb1f27214cc1f75
BLAKE2b-256 0a1c7a543e6127bcd207459da9898f6d10eb06a4937154924dd134b4f8ec7eeb

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp310-cp310-manylinux_2_28_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp310-cp310-manylinux_2_28_x86_64.whl
Algorithm Hash digest
SHA256 c939d19a5ac2724862c443e091541396bf4634af05eec8530b23e6756e313444
MD5 d822ef1979c6399ff2dd067f1b62479a
BLAKE2b-256 66f4b252355082d5ce3fce038a83b3da0a6eb56532664443cd29f55690bfcfb7

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl
Algorithm Hash digest
SHA256 2bb37c6005d5963c9c086101805d7629c336ea32d9ab4fd99807ee38366063e9
MD5 d3eef67f04ce096f0ecf68df008b6671
BLAKE2b-256 b374410e7ff968258599fd18457734cbf1d577067edd023749112a3e39300500

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp310-cp310-macosx_15_0_arm64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp310-cp310-macosx_15_0_arm64.whl
Algorithm Hash digest
SHA256 49be2a999c0339e98e032d9b95f5a7f7d7c061276c47ad7049b4be59801eb3f7
MD5 1e7058843d6dc0cd4880d8da4dead68d
BLAKE2b-256 d4aafbd6c57843fae329e6038a39ebe8da51870058a837743c50c96165c1a5f1

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp310-cp310-macosx_13_0_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp310-cp310-macosx_13_0_x86_64.whl
Algorithm Hash digest
SHA256 283fd985cb4095c76f2ba9a5e0c2a994f174f2c6a0dc709a2b17e4c7c403d23e
MD5 d831f24b5108a01a9ffe276bc57abb57
BLAKE2b-256 505ac68bcbde22d59a7f7ca83adb4ec4954d2d5294bfb1691de3c445430db418

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp39-cp39-macosx_15_0_arm64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp39-cp39-macosx_15_0_arm64.whl
Algorithm Hash digest
SHA256 4656f832bd4601e17de60b0d963ba2fd770f56ca1f61982cc48f82a22248a011
MD5 f21271f72f020324ca64ccd4ae439295
BLAKE2b-256 9902a511d2fa5ca146819c895175a7fcf9667099a3e80574772c9064c80771ce

See more details on using hashes here.

File details

Details for the file gwplot-0.4.1-cp39-cp39-macosx_13_0_x86_64.whl.

File metadata

File hashes

Hashes for gwplot-0.4.1-cp39-cp39-macosx_13_0_x86_64.whl
Algorithm Hash digest
SHA256 eb8365714e5afdc3e2de768a2cc7c0f4ca742e0ee4930c7bb0ca9434cfd491ac
MD5 b6e730b0a207f977ac6fe790ff344573
BLAKE2b-256 0157f3dbba56db2bfcb2177f04b7ed61351678ccdd07926300e05c34e0fbe877

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page