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A hierarchical clustering package for Scipy.

Project description

This library provides Python functions for hierarchical clustering. Its features include

  • generating hierarchical clusters from distance matrices
  • computing distance matrices from observation vectors
  • computing statistics on clusters
  • cutting linkages to generate flat clusters
  • and visualizing clusters with dendrograms.

The interface is very similar to MATLAB’s Statistics Toolbox API to make code easier to port from MATLAB to Python/Numpy. The core implementation of this library is in C for efficiency.

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