Python package hg19 genome annotation
Project description
hg19genome
A package to work with hg19 genomic intervals.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install hg19genome(not yet!!)
Usage
from hg19genome import Hg19Genome
genome = Hg19Genome()
genome.n_CpGs
genome.n_bases
genome.tss()
genome.tss(upstream=1000, downstream=1000)
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