hg19genome

A package to work with hg19 genomic intervals.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

    pip install hg19genome(not yet!!)

from hg19genome import Hg19Genome
genome = Hg19Genome()
genome.n_CpGs

genome.n_bases

genome.tss()

genome.tss(upstream=1000, downstream=1000)

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution for hg19genome 1.0.1
File	Size	Uploaded
hg19genome-1.0.1.tar.gz	53.6 MB	May 17, 2023	Details

Table of built distributions (wheels) for hg19genome 1.0.1
File	Interpreter	ABI	Platform	Reset
hg19genome-1.0.1-cp310-cp310-macosx_13_0_x86_64.whl 53.8 MB May 17, 2023	CPython 3.10	CPython 3.10	macOS 13.0+ x86-64	Details

Total release size: 107.5 MB

Download URL	hg19genome-1.0.1.tar.gz
Size	53.6 MB
Tags	Source
SHA-256 checksum How to use checksums	`4ab2ed305cee2aeb97cf312c8ff27b9944cf478832c8f1eaf83f016d6566b849`
BLAKE2b-256 checksum How to use checksums	`16e0a1089909f608e366988dfa9cca6af12fdd38ec490fe3361013ec8e6d646a`
Upload date	May 17, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.4.2 CPython/3.10.10 Darwin/22.1.0`

Download URL	hg19genome-1.0.1-cp310-cp310-macosx_13_0_x86_64.whl
Size	53.8 MB
Tags	CPython 3.10 macOS 13.0+ x86-64
SHA-256 checksum How to use checksums	`5f14078ad1e3cb757fc3e99a51ebde67fca59632fcbc5cfca2c8010be0387fae`
BLAKE2b-256 checksum How to use checksums	`a77f54140cbd53b9ea7dcbb176f31a6a4a555364efae0bd5ae4f78c64d773ab6`
Upload date	May 17, 2023
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.4.2 CPython/3.10.10 Darwin/22.1.0`