hg38genome
A package to work with hg38 genomic intervals.
Install
If you dont already have numpy and scipy installed, it is best to download
Anaconda, a python distribution that has them included.
https://continuum.io/downloads
Dependencies can be installed by:
pip install -r requirements.txt
PyPI install, presuming you have all its requirements installed:
pip install hg38genome(not yet!!)
Usage
# ailist version: 0.1.7
from hg38genome import Hg38Genome
genome = Hg38Genome()
genome.n_CpGs
genome.n_bases
genome.tss()
genome.tss(upstream=1000, downstream=1000)
1 maintainer
Metadata
1 maintainer
Release files for hg38genome 1.0.1
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| hg38genome-1.0.1.tar.gz | 46.7 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| hg38genome-1.0.1-cp310-cp310-macosx_13_0_x86_64.whl | CPython 3.10 | CPython 3.10 | macOS 13.0+ x86-64 | Details |
Total release size: 93.5 MB
Release files / hg38genome-1.0.1.tar.gz
| Download URL | hg38genome-1.0.1.tar.gz |
|---|---|
| Size | 46.7 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
01fdeb39f29c98147e8330a38f12b1d83077c50bc641b97790861c2c6b6b445c
|
|
BLAKE2b-256 checksum How to use checksums |
9effea8fba6573ccf1bf9bb65b80933435bfc3b8cf17103d507bfefbcaabc46d
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.4.2 CPython/3.10.10 Darwin/22.1.0
|
Release files / hg38genome-1.0.1-cp310-cp310-macosx_13_0_x86_64.whl
| Download URL | hg38genome-1.0.1-cp310-cp310-macosx_13_0_x86_64.whl |
|---|---|
| Size | 46.9 MB |
| Tags | CPython 3.10 macOS 13.0+ x86-64 |
|
SHA-256 checksum How to use checksums |
298838cc5d173d4f1b1c08eae09eb313c746c55242ea98ef1bdb4ae2836517bb
|
|
BLAKE2b-256 checksum How to use checksums |
48901d0982676ea038152d538999ec3b08767449f2b169ce21cd18cd6915569f
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
poetry/1.4.2 CPython/3.10.10 Darwin/22.1.0
|
