himena-relion
himena-relion is a modern RELION GUI implemented as a himena plugin.
⚠️ himena-relion is mainly tested with RELION 5.0.x and may not work with other
versions.
(Original dataset is from RELION SPA tutorial)
→ Documentation
Installation
pip install himena-relion[recommended]
himena-relion is a plugin of himena. You will need to install both packages into the same Python environment, and mark himena-relion as a startup plugin of your himena profile. For more details, please refer to the installation guide.
Highlights
View, queue and run RELION single-particle and tomography jobs
Outputs of most of the job types can be directly visualized in the GUI.
Efficient 2D/3D rendering over SSH using vispy and EGL
himena-relion is not a web-based application — this has a huge advantage in the interactive rendering of large images that is essential especially for cryo-ET. Owing to the powerful vispy backend and EGL offscreen rendering, himena-relion can provide efficient 2D/3D rendering even over SSH.
View and open jobs from the flowchart
You can interactively view your RELION job pipeline as a flowchart, open jobs and its input/output files.
RELION "external" jobs
You can safely create a RELION external job by subclassing RelionExternalJob.
himena-relion also provides useful external jobs missing in the RELION GUI, such as
"Erase Golds" and "Shift Map".
1 maintainer
Metadata
1 maintainer
Release files for himena-relion 0.0.13
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| himena_relion-0.0.13.tar.gz | 11.4 MB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| himena_relion-0.0.13-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 11.8 MB
Release files / himena_relion-0.0.13.tar.gz
| Download URL | himena_relion-0.0.13.tar.gz |
|---|---|
| Size | 11.4 MB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
python-httpx/0.27.2
|
Release files / himena_relion-0.0.13-py3-none-any.whl
| Download URL | himena_relion-0.0.13-py3-none-any.whl |
|---|---|
| Size | 378.4 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
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| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
python-httpx/0.27.2
|
