histocartography 0.1.2

Installable histocartography package.

High-level description of the library.

Installation

PyPI installer

pip install histocartography

From sources

• Create a conda environment:

conda env create -f environment.yml

Tests

To ensure proper installation, run unit tests as:

python3 -m unittest discover -v

• Activate it:

conda activate histocartography

Using histocartography

Example 1:

Example 2:

Papers already using this library

• Hierarchical Graph Representations for Digital Pathology, Pati et al., preprint, 2021.
• Quantifying Explainers of Graph Neural Networks in Computational Pathology, Jaume et al., CVPR, 2021.

If you use this library, please consider citing:

@inproceedings{pati2021,
    title = {Hierarchical Graph Representations for Digital Pathology},
    author = {Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani},
    booktitle = {https://arxiv.org/pdf/2102.11057},
    year = {2021}
}