hstrat 0.2.0

hstrat enables phylogenetic inference on distributed digital evolution populations

hstrat

hstrat enables phylogenetic inference on distributed digital evolution populations

• Free software: MIT license

• Documentation: https://hstrat.readthedocs.io.

from hstrat import hstrat


individual1 = hstrat.HereditaryStratigraphicColumn()
individual2 = hstrat.HereditaryStratigraphicColumn()

individual1_child1 = individual1.CloneDescendant()

individual1.HasAnyCommonAncestorWith(individual2) # -> False
individual1_child1.HasAnyCommonAncestorWith(individual2) # -> False

individual1_grandchild1 = individual1_child1.CloneDescendant()
individual1_grandchild2 = individual1_child1.CloneDescendant()

individual1_grandchild1.CalcRankOfMrcaBoundsWith(
  individual1_grandchild2,
) # -> (1, 2)

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.

History

0.0.0 (2022-02-22)

• First release on PyPI.