Analyze cell-cell interaction with spatial transcriptome data.
Project description
HueTracer: Cell-cell interaction prediction model for Visium HD spatial transcriptome platform
HueTracer is a software program created as a follow-up to DeepCOLOR software.
Instalation
You can install HueTracer using pip command from your shell.
pip install huetracer
Usage
You need to prepare Visium HD spatial transcriptome data generated with SpaceRanger program by 10X. You can see the usage as follows.
Visium HD giant cell tumor sample
- Nucleus segmentation tutorial
- Cell type annotation for single cell transcriptome tutorial
- Cell type label transfer tutorial
Visium HD colon adenocarcinoma sample obtained from 10X website
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