Analyze cell-cell interaction with spatial transcriptome data.
Project description
HueTracer: Cell-cell interaction prediction model for Visium HD spatial transcriptome platform
HueTracer is a software program created as a follow-up to DeepCOLOR software.
Instalation
You can install HueTracer using pip command from your shell.
pip install huetracer
Usage
You need to prepare Visium HD spatial transcriptome data generated with SpaceRanger program by 10X. You can see the usage as follows.
Visium HD giant cell tumor sample
- Nucleus segmentation tutorial
- Cell type annotation for single cell transcriptome tutorial
- Cell type label transfer tutorial
Visium HD colon adenocarcinoma sample obtained from 10X website
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file huetracer-0.0.2.tar.gz.
File metadata
- Download URL: huetracer-0.0.2.tar.gz
- Upload date:
- Size: 18.0 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.11.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
de8c5e4f85fcdab75eedf677952bde596413c2fee05c1124e7f03997a375fb9f
|
|
| MD5 |
fcb2547516ee235bd6d1ec27a0a08f20
|
|
| BLAKE2b-256 |
9cbc69902efda0dcc53706bdbcc8e351e7826ecebfaf3efe781d9261222512b4
|
File details
Details for the file huetracer-0.0.2-py3-none-any.whl.
File metadata
- Download URL: huetracer-0.0.2-py3-none-any.whl
- Upload date:
- Size: 18.7 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/6.1.0 CPython/3.11.7
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
d8c14fa6e6c053a3953b5322d4e394927188d5acf80392b066154d04eb776d76
|
|
| MD5 |
515f064b0d8efb1c7793e3a9df9b0ced
|
|
| BLAKE2b-256 |
c655ef20c2dfd92b463c67a96cf7a1e14dc59008aeeaf5c6736818c6227afcd1
|
