aeon-core
Shared infrastructure for the HyphAeon family of packages (HyphAeon, ChronAeon).
Contains the PhyloAxialTransformer foundation model, pretrained weight resolution (HuggingFace Hub), and core utilities for alignment processing, inference, spectral splits, temporal parsing, I/O, and statistics.
Installation
pip install hyphaeon-core
Prebuilt wheels (abi3, one per platform covering all Python >= 3.8) ship a
compiled Rust extension at aeon_core._native providing the canonical TN93
distance and statistical kernels. Installing from the sdist instead requires a
Rust toolchain (rustup recommended) — maturin compiles native/ at install
time. The extension is required for TN93-backed functions — a missing
extension means a broken install and raises ImportError at module load.
Components
model—PhyloAxialTransformer,BustedMultiTaskHead,decode_soft_ordinal_lrtweights— Weight resolution from HuggingFace Hub (datamonkey/hyphaeon), safetensors loadinginference— Device management, adaptive batch sizing, model loading, alignment preparationdataset— Alignment parsing, TN93 distance matrices, tree handling, MDS coordinatessplits— Cross-taxa attention extraction, fused affinity matricestemporal— Date parsing utilities (parse_date_to_decimal,extract_date_from_string)io— JSON/CSV writers, directory helpersstats— LRT p-value computation, Benjamini-Hochberg, Cauchy combination_progress—ChunkProgressprogress bar utility
1 maintainer
Metadata
1 maintainer
Release files for hyphaeon-core 0.4.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Built distributions (wheels)
| File | Reset | |||
|---|---|---|---|---|
| hyphaeon_core-0.4.0-cp38-abi3-win_amd64.whl | CPython 3.8 | abi3 | Windows x86-64 | Details |
| hyphaeon_core-0.4.0-cp38-abi3-manylinux_2_34_x86_64.whl | CPython 3.8 | abi3 | Linux glibc 2.34+ x86-64 | Details |
| hyphaeon_core-0.4.0-cp38-abi3-manylinux_2_34_aarch64.whl | CPython 3.8 | abi3 | Linux glibc 2.34+ ARM64 | Details |
| hyphaeon_core-0.4.0-cp38-abi3-macosx_11_0_arm64.whl | CPython 3.8 | abi3 | macOS 11.0+ ARM64 | Details |
| hyphaeon_core-0.4.0-cp38-abi3-macosx_10_12_x86_64.whl | CPython 3.8 | abi3 | macOS 10.12+ x86-64 | Details |
Total release size: 1.7 MB
Release files / hyphaeon_core-0.4.0-cp38-abi3-win_amd64.whl
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| Tags | CPython 3.8 Windows x86-64 abi3 |
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