aeon-core
Shared infrastructure for the HyphAeon family of packages (HyphAeon, ChronAeon).
Contains the PhyloAxialTransformer foundation model, pretrained weight resolution (HuggingFace Hub), and core utilities for alignment processing, inference, spectral splits, temporal parsing, I/O, and statistics.
Installation
pip install hyphaeon-core
Components
model—PhyloAxialTransformer,BustedMultiTaskHead,decode_soft_ordinal_lrtweights— Weight resolution from HuggingFace Hub (datamonkey/hyphaeon), safetensors loadinginference— Device management, adaptive batch sizing, model loading, alignment preparationdataset— Alignment parsing, TN93 distance matrices, tree handling, MDS coordinatessplits— Cross-taxa attention extraction, fused affinity matricestemporal— Date parsing utilities (parse_date_to_decimal,extract_date_from_string)io— JSON/CSV writers, directory helpersstats— LRT p-value computation, Benjamini-Hochberg, Cauchy combination_progress—ChunkProgressprogress bar utility
1 maintainer
Metadata
1 maintainer
Release files for hyphaeon-core 0.2.0
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| File | Size | Uploaded | Provenance | |
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| hyphaeon_core-0.2.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 106.5 kB
Release files / hyphaeon_core-0.2.0.tar.gz
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