🪐 Imaging Server Kit
Turn Python-based image processing workflows into algorithms that gain extra functionalities.
- Turn your algorithms into web servers and run computations from Napari, QuPath, or Python via HTTP requests.
https://github.com/user-attachments/assets/0be819ea-fcc1-48ee-8fae-7265e63a00d4
- Generate dock widgets to run your algorithms interactively in Napari or QuPath.
https://github.com/user-attachments/assets/1ff572f7-f159-4f5a-afd4-7a157de3d9f8
- Run your algorithms tile-by-tile on the input data.
https://github.com/user-attachments/assets/47c2f734-5683-49d9-8aea-388c3a2bc16d
- Stream results to inspect them in real-time.
https://github.com/user-attachments/assets/a3f69a9f-fb68-4580-a804-6c57d5807b9a
Development status
The Imaging Server Kit is being actively developed and is iterating rapidly. It is likely that there will be compatibility-breaking changes in future versions.
Installation
Install the imaging-server-kit package with pip:
pip install imaging-server-kit
or clone the project and install the development version:
git clone https://github.com/Imaging-Server-Kit/imaging-server-kit.git
cd imaging-server-kit
pip install -e .
To use the Napari-related functionalities, you additionally have to install napari and napari-toolkit which are not included by default. Install the package with:
pip install "imaging-server-kit[napari]"
To use the QuPath-related functionalities, you additionally have to install qubalab>=0.2.0, which is not included by default. Install the package with:
pip install "imaging-server-kit[qupath]"
Getting started
The documentation is available on this page.
Contributing
Contributions are very welcome.
License
This software is distributed under the terms of the BSD-3 license.
Issues
If you encounter any problems, please file an issue along with a detailed description.
Citing
If you use the Imaging Server Kit in the context of scientific publication, you can cite it as below.
BibTeX:
@software{mallory_wittwer_2025_15673152,
author = {Mallory Wittwer and Edward Andò and Maud Barthélemy and Florian Aymanns},
title = {Imaging-Server-Kit/imaging-server-kit: v0.0.14},
url = {https://doi.org/10.5281/zenodo.15673152},
doi = {10.5281/zenodo.15673152},
version = {v0.0.14},
year = 2025,
}
Acknowledgements
We thank the Personalized Health and Related Technologies for funding this project.
1 maintainer
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