Multi-scale cell interaction model for spatial transcriptomics data.
Project description
InterScale
InterScale is a package for cell interaction analysis in spatial transcriptomics data. It is build on top of PyG (via geome), AnnData, scanpy squidpy and scvi-tools.
Resources
- An installation guide, tutorials and API documentation is available in the documentation.
- Check out our seperate reproduciblity repository to reproduce the figures for the manuscript
- Please use issues to submit bug reports.
- If you would like to contribute, check out the contributing guide.
- If you find InterScale useful for your research, please consider citing the InterScale preprint.
Reference
@article{DrummerJimenez2026,
author = {Drummer, F. and Jimenez, S. et al.},
title = {InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics},
journal = {BioArvix},
year = {2026},
doi = {???},
url = {???}
}
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