iskakov
pip install iskakov installs own-baseline
and gives you its command line under a second name. The two names run the same
program:
pip install iskakov
iskakov check cells.h5ad --score obs:ccat --ordinal obs:stage \
--primitive degree-corr --ordinal-source experimental
ownbaseline check ... # identical
Import the real package in scripts:
from own_baseline import conditional_skill_report
What the tool does
A potency score is supposed to order single cells by developmental potential.
Most published scores are built on a low-order primitive of the same expression
matrix: the number of genes detected, the correlation of a cell's profile with
network node degree, the Shannon entropy of the profile, the library size.
own-baseline asks whether the score orders a held-out ordinal any better than
that primitive does on its own. It rank-residualizes the score on its
author-declared primitive, takes Kendall's tau_b against the ordinal, and
compares the result against a measured floor from a 200-seed null grid indexed
by sample size, rank correlation, kernel and covariate count. The floor table
ships inside the wheel, so the answer does not depend on a network call.
Four verbs: check, floors, primitives, verify.
Where the code lives
Source, tests, the null grid and the documentation are in the own-baseline
repository. This distribution is 60 lines of forwarding.
MIT licensed.
1 maintainer
Release files for iskakov 0.2.1
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Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| iskakov-0.2.1.tar.gz | 4.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| iskakov-0.2.1-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 9.1 kB
Release files / iskakov-0.2.1.tar.gz
| Download URL | iskakov-0.2.1.tar.gz |
|---|---|
| Size | 4.6 kB |
| Tags | Source |
|
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| Size | 4.5 kB |
| Tags | Python 3 |
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