iskakov

pip install iskakov installs own-baseline and gives you its command line under a second name. The two names run the same program:

pip install iskakov

iskakov    check cells.h5ad --score obs:ccat --ordinal obs:stage \
                            --primitive degree-corr --ordinal-source experimental
ownbaseline check ...        # identical

Import the real package in scripts:

from own_baseline import conditional_skill_report

What the tool does

A potency score is supposed to order single cells by developmental potential. Most published scores are built on a low-order primitive of the same expression matrix: the number of genes detected, the correlation of a cell's profile with network node degree, the Shannon entropy of the profile, the library size. own-baseline asks whether the score orders a held-out ordinal any better than that primitive does on its own. It rank-residualizes the score on its author-declared primitive, takes Kendall's tau_b against the ordinal, and compares the result against a measured floor from a 200-seed null grid indexed by sample size, rank correlation, kernel and covariate count. The floor table ships inside the wheel, so the answer does not depend on a network call.

Four verbs: check, floors, primitives, verify.

Where the code lives

Source, tests, the null grid and the documentation are in the own-baseline repository. This distribution is 60 lines of forwarding.

MIT licensed.