A tool to process and analyze iTP-Seq datasets
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Project description
itpseq: A Python module and command-line tool for the analysis of iTP-Seq data.
The latest documentation is available at itpseq.readthedocs.io.
Dependencies
itpseq runs on Python 3.9+ on Linux, MacOS, and Windows.
Installation requires regex, numpy, pandas, matplotlib, seaborn, pydeseq2, logomaker, Jinja2, weasyprint, ipython, click, and ipywidgets. The dependencies are installed automatically when installing from pip.
Installation
The latest stable release (and required dependencies) can be installed from PyPI:
pip install itpseq
To update the package to the latest version, run:
pip install -U itpseq
After installation, if Python and pip are configured correctly, the "itpseq" command should be available in the terminal. If not, one should ensure the location of the executable is in the PATH.
Citing
Known issues
On MacOS and Windows, the "weasyprint" library that is used to produce the PDF version of the report seems to have an issue and exporting a PDF report is currently not possible. It is nevertheless possible to produce an HTML report by running:
itpseq report -o report.html data_directory
in place of:
itpseq report data_directory
Project details
Verified details
These details have been verified by PyPIProject links
GitHub Statistics
Maintainers
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file itpseq-0.0.1a19.tar.gz.
File metadata
- Download URL: itpseq-0.0.1a19.tar.gz
- Upload date:
- Size: 1.9 MB
- Tags: Source
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
109dff39e38a0c59807cfed12b4d1cd67ecb594dca938fc870a57e4d4884f48d
|
|
| MD5 |
3267756229c903c1bd49e69d9bfc07d7
|
|
| BLAKE2b-256 |
6902e39af785e7973511c2e3f1222669415aba31075a54c01d885968c12e149e
|
Provenance
The following attestation bundles were made for itpseq-0.0.1a19.tar.gz:
Publisher:
publish-to-pypi.yml on t-renault/itpseq
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
itpseq-0.0.1a19.tar.gz -
Subject digest:
109dff39e38a0c59807cfed12b4d1cd67ecb594dca938fc870a57e4d4884f48d - Sigstore transparency entry: 193753542
- Sigstore integration time:
-
Permalink:
t-renault/itpseq@93f2e32304d9e9638147ea71dcc8531c370ac711 -
Branch / Tag:
refs/tags/0.0.1a19 - Owner: https://github.com/t-renault
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish-to-pypi.yml@93f2e32304d9e9638147ea71dcc8531c370ac711 -
Trigger Event:
push
-
Statement type:
File details
Details for the file itpseq-0.0.1a19-py3-none-any.whl.
File metadata
- Download URL: itpseq-0.0.1a19-py3-none-any.whl
- Upload date:
- Size: 1.9 MB
- Tags: Python 3
- Uploaded using Trusted Publishing? Yes
- Uploaded via: twine/6.1.0 CPython/3.12.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
0235fedd652c2ade4cc840c819848a8ceffbcdab2f527cecdd57e8048502e120
|
|
| MD5 |
ec5c686ac917f78994abcd74c99961b3
|
|
| BLAKE2b-256 |
50f7227e13ec1a0900ea53a50d909f3425b93c8dcdb17ec03456d45f5b7abe33
|
Provenance
The following attestation bundles were made for itpseq-0.0.1a19-py3-none-any.whl:
Publisher:
publish-to-pypi.yml on t-renault/itpseq
-
Statement:
-
Statement type:
https://in-toto.io/Statement/v1 -
Predicate type:
https://docs.pypi.org/attestations/publish/v1 -
Subject name:
itpseq-0.0.1a19-py3-none-any.whl -
Subject digest:
0235fedd652c2ade4cc840c819848a8ceffbcdab2f527cecdd57e8048502e120 - Sigstore transparency entry: 193753544
- Sigstore integration time:
-
Permalink:
t-renault/itpseq@93f2e32304d9e9638147ea71dcc8531c370ac711 -
Branch / Tag:
refs/tags/0.0.1a19 - Owner: https://github.com/t-renault
-
Access:
public
-
Token Issuer:
https://token.actions.githubusercontent.com -
Runner Environment:
github-hosted -
Publication workflow:
publish-to-pypi.yml@93f2e32304d9e9638147ea71dcc8531c370ac711 -
Trigger Event:
push
-
Statement type:
