Calcium Imaging and Behavior Analysis
Project description
caliban: Calcium Imaging and Behavior Analysis
...in dreaming,
The clouds methought would open, and show riches
Ready to drop upon me; that, when I waked,
I cried to dream again.
The Tempest, Act III, Scene ii
Twinkling calcium imaging videos are certainly filled with riches. Whereas Caliban is showered with riches in his slumber, we must dig a little harder to mine these datasets. This software was developed to assist fellow wayward travelers on their journey to understanding how neurons encode information.
This code base was written with the intention of serving as a toolbox for:
- Statistical Testing of neuron classification by behavior.
- Visualization of neural activity and behavior data
- Graph Theoretical Analysis of networks of neurons.
- Data Visualization tool -- see the "full picture" of the data garnered from experiments with integration of calcium imaging movies, behavioral videos, and data processing results.
- processing behavior data with Google Colab notebooks
For any feature requests, create an issue.
Getting Started
Google Colab
!pip install jb-caliban
Troubleshooting
Release history Release notifications | RSS feed
Download files
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
Source Distribution
Built Distribution
Filter files by name, interpreter, ABI, and platform.
If you're not sure about the file name format, learn more about wheel file names.
Copy a direct link to the current filters
File details
Details for the file jb-caliban-0.0.5.tar.gz.
File metadata
- Download URL: jb-caliban-0.0.5.tar.gz
- Upload date:
- Size: 135.3 kB
- Tags: Source
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
6954b64c24a5c3ba0a30bc1ecd2a71ccc5de4371e3daeb3fdfd6bf4ccb46b97d
|
|
| MD5 |
06ef1afd0b95a360b70f67030fa7c1bc
|
|
| BLAKE2b-256 |
0072ec09a65c49e018d12d2ba0c2be8c9345414787dd1dc3b6e74bb5c8e97a67
|
File details
Details for the file jb_caliban-0.0.5-py3-none-any.whl.
File metadata
- Download URL: jb_caliban-0.0.5-py3-none-any.whl
- Upload date:
- Size: 145.6 kB
- Tags: Python 3
- Uploaded using Trusted Publishing? No
- Uploaded via: twine/3.4.2 importlib_metadata/4.8.1 pkginfo/1.7.1 requests/2.26.0 requests-toolbelt/0.9.1 tqdm/4.62.3 CPython/3.6.9
File hashes
| Algorithm | Hash digest | |
|---|---|---|
| SHA256 |
886599169895ff158f3f13348ffb4524a6fe56b3107f59e3e265f0519a53d076
|
|
| MD5 |
e3cbf0ab257f4bf50263556c51fe6a6a
|
|
| BLAKE2b-256 |
fa0932b92fb5757b4e846cf337d01097a8275bc9aa88e79a30444ca8358756b9
|
