Calcium Imaging and Behavior Analysis
Project description
caliban: Calcium Imaging and Behavior Analysis
...in dreaming,
The clouds methought would open, and show riches
Ready to drop upon me; that, when I waked,
I cried to dream again.
The Tempest, Act III, Scene ii
Twinkling calcium imaging videos are certainly filled with riches. Whereas Caliban is showered with riches in his slumber, we must dig a little harder to mine these datasets. This software was developed to assist fellow wayward travelers on their journey to understanding how neurons encode information.
This code base was written with the intention of serving as a toolbox for:
- Statistical Testing of neuron classification by behavior.
- Visualization of neural activity and behavior data
- Graph Theoretical Analysis of networks of neurons.
- Data Visualization tool -- see the "full picture" of the data garnered from experiments with integration of calcium imaging movies, behavioral videos, and data processing results.
- processing behavior data with Google Colab notebooks
For any feature requests, create an issue.
Getting Started
Google Colab
!pip install jb-caliban
Troubleshooting
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