Skip to main content

An abstraction layer to run jobs on HPC clusters using Grid Engine, Torque, or locally.

Project description

https://img.shields.io/pypi/v/jobrunner.svg

An abstraction layer to run jobs on HPC clusters using Grid Engine, Torque, or locally.

The jobrunner package was developed by the United States Food and Drug Administration, Center for Food Safety and Applied Nutrition.

Features

  • Python API for job submission
  • Consistent interface to run jobs on Grid Engine, Torque, or locally
  • Dependencies between jobs
  • Array jobs and normal non-array jobs
  • Array job parameter substitution
  • Array job slot-dependency
  • Limit the CPU resources consumed by array jobs
  • Separate log files for each array job task

Citing jobrunner

To cite jobrunner, please reference the jobrunner GitHub repository:

https://github.com/CFSAN-Biostatistics/jobrunner

License

See the LICENSE file included in the jobrunner distribution.

History

1.2.0 (2019-10-11)

  • Add the capability to run in quiet mode when running locally on a workstation so the job stdout and stderr are written to log files only.

1.1.0 (2019-06-07)

  • HPC array job command lines are quoted and executed in a subshell by default with better support for complex command lines.

1.0.0 (2018-12-03)

  • First public release.

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Files for jobrunner, version 1.2.0
Filename, size File type Python version Upload date Hashes
Filename, size jobrunner-1.2.0.tar.gz (18.0 kB) File type Source Python version None Upload date Hashes View

Supported by

Pingdom Pingdom Monitoring Google Google Object Storage and Download Analytics Sentry Sentry Error logging AWS AWS Cloud computing DataDog DataDog Monitoring Fastly Fastly CDN DigiCert DigiCert EV certificate StatusPage StatusPage Status page