Features

• Python API for job submission

• Consistent interface to run jobs on Grid Engine, SLURM, Torque, or locally

• Dependencies between jobs

• Array jobs and normal non-array jobs

• Array job parameter substitution

• Array job slot-dependency

• Limit the CPU resources consumed by array jobs

• Separate log files for each array job task

Citing jobrunner

To cite jobrunner, please reference the jobrunner GitHub repository:

https://github.com/CFSAN-Biostatistics/jobrunner

License

See the LICENSE file included in the jobrunner distribution.

1.4.0 (2020-08-21)

• Add support for wall clock time limits.

1.3.1 (2020-08-12)

• Allow array tasks in local mode to process only a portion of the lines in the array file by setting num_tasks to a value less than the number of lines in the array file.

1.3.0 (2020-04-12)

• Add support for the SLURM job scheduler.

• Add capability to request exclusive access to compute nodes when running on SLURM.

1.2.0 (2019-10-11)

• Add the capability to run in quiet mode when running locally on a workstation so the job stdout and stderr are written to log files only.

1.1.0 (2019-06-07)

• HPC array job command lines are quoted and executed in a subshell by default with better support for complex command lines.

1.0.0 (2018-12-03)

• First public release.