kaptive-plot 0.0.1

Plotting library for Kaptive, the tool for in silico serotyping

Kaptive Plot

• Github repository: https://github.com/tomdstanton/kaptive-plot/
• Documentation https://tomdstanton.github.io/kaptive-plot/

Installation

From PyPI:

$ pip install kaptive-plot
---> 100%
Installed!

From source:

$ pip install git+https://github.com/tomdstanton/kaptive-plot.git
---> 100%
Installed!

Usage

$ kaptive-plot -h

usage: kaptive-plot <db> <json>

Plotting library for Kaptive, the tool for in silico serotyping

Inputs:

  db              Database path or keyword used to generate results
  json            Kaptive results JSON file or "-" for stdin

Outputs:

  -o, --out       Output path (default: .)
  -f , --format   Output format: png, svg or html (default: png)
  -p, --plotly    Use plotly instead of matplotlib (default: False)

Other options:

  -v, --version   show program's version number and exit
  -h, --help      Show this help message and exit

For more help, visit: https://tomdstanton.github.io/kaptive-plot

Examples

Static plot

kaptive-plot kpsc_k tests/test.json

Interactive plot

kaptive-plot kpsc_k tests/test.json --plotly --format html

{"file_path": "docs/assets/test.json"}