Skip to main content

Display and count k-mers from the fasta file

Project description

Counting K-mers from the sequence in fasta format

alt text

Usage:

import kmers
kmers.kmers_from_file('filename.fasta')

where, filename.fasta is the name of the file in fasta format

Counting K-mers from the sequence obtained from NCBI using accession number

Usage:

import kmers
kmers.kmers_from_ncbi('email')

where, email is your email address and you also need to provide the NCBI ACCESSION number during the prompt

Project details


Download files

Download the file for your platform. If you're not sure which to choose, learn more about installing packages.

Source Distribution

kmersfasta-0.0.2.tar.gz (1.8 kB view details)

Uploaded Source

File details

Details for the file kmersfasta-0.0.2.tar.gz.

File metadata

  • Download URL: kmersfasta-0.0.2.tar.gz
  • Upload date:
  • Size: 1.8 kB
  • Tags: Source
  • Uploaded using Trusted Publishing? No
  • Uploaded via: twine/3.2.0 pkginfo/1.5.0.1 requests/2.22.0 setuptools/41.4.0 requests-toolbelt/0.9.1 tqdm/4.50.0 CPython/3.7.4

File hashes

Hashes for kmersfasta-0.0.2.tar.gz
Algorithm Hash digest
SHA256 01f7d5518ec6e57daddd95850f7ed9f30ce69b4973e6194cdf032fd69697bc64
MD5 7899356c34044ecb3be3d341cd460e14
BLAKE2b-256 94409346b80723493be9d5eff185209dea5b356c61588944b88061a69c3176b1

See more details on using hashes here.

Supported by

AWS Cloud computing and Security Sponsor Datadog Monitoring Depot Continuous Integration Fastly CDN Google Download Analytics Pingdom Monitoring Sentry Error logging StatusPage Status page