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Bioinformatic sequence analysis of membrane proteins.

Project description

Bioinformatic sequence analysis of membrane proteins.

What is this repository for?

  • Parsing of UniProt flatfiles
  • Downloading homologues (primarily with SIMAP)
  • Parsing BLAST-like XML files
  • Analysis of protein sequences
  • Automated figure creation

License

  • korbinian is released under the permissive MIT licence

Credits

  • Mark Teese
  • Martin Ortner
  • Shenger Wang
  • Rimma Jenske
  • Enzo Torasso
  • Dominik Mueller

Citation

  • scientific publication to be added
  • currently cited as “the korbinian python package (Mark Teese, Technical University of Munich)”

Contact

For contact details, see the image below.

Further contact details are available at my staff page within the Langosch lab of the Technical University of Munich.

https://raw.githubusercontent.com/teese/eccpy/master/docs/images/signac_seine_bei_samois.png

Example Summary Files

https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/density.png

Compare three different membrane protein families:

https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/n_homol.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/aa_propens.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/len.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/percent_TM.png

Project details


Release history Release notifications

This version
History Node

0.3.2

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Filename, size & hash SHA256 hash help File type Python version Upload date
korbinian-0.3.2-py3-none-any.whl (230.7 kB) Copy SHA256 hash SHA256 Wheel py3 May 22, 2018
korbinian-0.3.2.tar.gz (204.2 kB) Copy SHA256 hash SHA256 Source None May 22, 2018

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