Bioinformatic sequence analysis of membrane proteins.

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License: MIT

Author: Mark Teese

Tags bioinformatics, protein, sequence, membrane, conservation, evolution, membranous, soluble, polypeptide, BLAST, SIMAP

Project description

Bioinformatic sequence analysis of membrane proteins.

What is this repository for?

  • Parsing of UniProt flatfiles

  • Downloading homologues (primarily with SIMAP)

  • Parsing BLAST-like XML files

  • Analysis of protein sequences

  • Automated figure creation

License

  • korbinian is released under the permissive MIT licence

Credits

  • Mark Teese

  • Martin Ortner

  • Shenger Wang

  • Rimma Jenske

  • Enzo Torasso

  • Dominik Mueller

Citation

  • scientific publication to be added

  • currently cited as “the korbinian python package (Mark Teese, Technical University of Munich)”

Contact

For contact details, see the image below.

Further contact details are available at my staff page within the Langosch lab of the Technical University of Munich.

https://raw.githubusercontent.com/teese/eccpy/master/docs/images/signac_seine_bei_samois.png

Example Summary Files

https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/density.png

Compare three different membrane protein families:

https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/n_homol.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/aa_propens.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/len.png https://raw.githubusercontent.com/teese/korbinian/master/korbinian/examples/images/percent_TM.png

Project details

Verified details

These details have been verified by PyPI
Maintainers
Avatar for markteese from gravatar.com markteese

Unverified details

These details have not been verified by PyPI
Project links
GitHub Statistics

View statistics for this project via Libraries.io, or by using our public dataset on Google BigQuery

Meta

License: MIT

Author: Mark Teese

Tags bioinformatics, protein, sequence, membrane, conservation, evolution, membranous, soluble, polypeptide, BLAST, SIMAP


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0.3.4

0.3.2

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