Linear Segmentation

linear_segmentation using Bayesian Change Point Segmentation or Circular Binary segmentation.

Install

If you dont already have numpy and scipy installed, it is best to download Anaconda, a python distribution that has them included.

    https://continuum.io/downloads

Dependencies can be installed by:

    pip install -r requirements.txt

PyPI install, presuming you have all its requirements installed:

	pip install linear_segment

Usage

from linear_segment import segment
import numpy as np

# Create data
np.random.seed(10)
T = 50
x = np.zeros(T)
x[10:20] = 1.0
x[30:40] = 1.0

labels = np.repeat("a", T)   # "a" is a dummy label

# Calculate segments
segments = segment(x, labels, method="online_both", cutoff=0.3, offset=5)
print(segments)

LabeledIntervalArray
   (0-10, a)
   (10-20, a)
   (20-30, a)
   (30-40, a)
   (40-50, a)
segments = segment(x, labels, method="cbs", shuffles=200, p=0.05)
print(segments)

LabeledIntervalArray
   (0-10, a)
   (10-20, a)
   (20-30, a)
   (30-40, a)
   (40-50, a)

Metadata

Release files for linear-segment 1.2.0

For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.

Source distribution (sdist)

Source distribution for linear-segment 1.2.0
File	Size	Uploaded
linear_segment-1.2.0.tar.gz	272.5 kB	Jul 22, 2024	Details

Built distribution (wheel)

Table of built distributions (wheels) for linear-segment 1.2.0
File	Interpreter	ABI	Platform	Reset
linear_segment-1.2.0-cp311-cp311-macosx_14_0_x86_64.whl 407.8 kB Jul 22, 2024	CPython 3.11	CPython 3.11	macOS 14.0+ x86-64	Details

Total release size: 680.4 kB

Release files / linear_segment-1.2.0.tar.gz

Download URL	linear_segment-1.2.0.tar.gz
Size	272.5 kB
Tags	Source
SHA-256 checksum How to use checksums	`8f5d13251aafd5815d0b9910399dfdc61d39f678440e6892dd84eb56a6dad1bc`
BLAKE2b-256 checksum How to use checksums	`f9fc9c16d6cf7fae002ac883735376c54598c4f4ab6625d7d1aabe2e7d302de8`
Upload date	Jul 22, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.7.1 CPython/3.11.3 Darwin/23.5.0`

Release files / linear_segment-1.2.0-cp311-cp311-macosx_14_0_x86_64.whl

Download URL	linear_segment-1.2.0-cp311-cp311-macosx_14_0_x86_64.whl
Size	407.8 kB
Tags	CPython 3.11 macOS 14.0+ x86-64
SHA-256 checksum How to use checksums	`83df1e7d032c1871fb533f4d3b0db9cf116633d80ceb61953c8100bbd457cfe1`
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Upload date	Jul 22, 2024
Uploaded using Trusted Publishing? What is trusted publishing?	No
Uploaded via	`poetry/1.7.1 CPython/3.11.3 Darwin/23.5.0`