A common framework to analyse multi-modal single-cell data.

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linkapy

A framework to process and analyse multi-modal single-cell data. Linkapy is mainly used to process single-cell methylation data, and is focused on creating an integrated (muData) object of multimodal single-cell data. In this context it means that multiple modalities (e.g. accessibility, DNA methylation, RNA expression) are available from the same cell.

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Note that this package is still in development and is prone to change without notice. A rudimentary documentation is available.

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pip install linkapy
linkapy --help

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