A common framework to analyse multi-modal single-cell data.

Project description

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linkapy

A framework to process and analyse multi-modal single-cell data. Linkapy is mainly used to process single-cell methylation data, and is focused on creating an integrated (muData) object of multimodal single-cell data. In this context it means that multiple modalities (e.g. accessibility, DNA methylation, RNA expression) are available from the same cell.

Documentation

Note that this package is still in development and is prone to change without notice. A rudimentary documentation is available.

Quickstart

pip install linkapy
linkapy --help

Project details

Release history Release notifications | RSS feed

1.7.0

Feb 6, 2026

This version

1.6.0

Feb 4, 2026

1.5.0

Sep 19, 2025

1.4.0

Sep 15, 2025

1.3.0

Sep 13, 2025

1.2.1

Aug 22, 2025

1.2.0

Aug 21, 2025

1.1.0

Jul 29, 2025

1.0.0

Jul 29, 2025

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linkapy 1.6.0

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SHA256	`dbe1883de166f17d32b5b9a3663dca90b6690931900913ebfde17bc9541d0de9`
MD5	`70557a7dfbc96517a89c899668a5bc37`
BLAKE2b-256	`aab04fb49741508cfab7cee4e20f42c5d5f668ecc8deeaff65b048d4c6305431`

Algorithm	Hash digest
SHA256	`f7973bcdab5dcf54d2385faf8204ffa56cbaa64f30ad2a291c05193429891c12`
MD5	`c0224c2c70ea7fe3bc870d302ae5105e`
BLAKE2b-256	`1d7b9b4897cb20f6ae5cb8083ea737f27bfbbbff0a66fce4eb12675c3252235b`

Algorithm	Hash digest
SHA256	`6349ce649c9ab538de148726f178d4eec06c0a1e2fdd84bc6e5670646ab2940c`
MD5	`cf8b3ca3df90857dcbbc3aaa64428cd5`
BLAKE2b-256	`366b64f8dd76b323ad605c43ab497ca09f1a637421de7d4664bafd51d55bbdef`

Algorithm	Hash digest
SHA256	`03ce57753c57ec76ba22d0297a5449f8496a43cb896a58e5143525e3550164b7`
MD5	`363ec737089a3624512f3e2b4c7054f9`
BLAKE2b-256	`bb81cd92d87bfc6c535659b2a095a530df12b679f8ceb8d13d2f0da596bb14cc`

Algorithm	Hash digest
SHA256	`d192361cf51d13a2857169c4e8d7914f18609e3a6ad9f6685770106beb549d4e`
MD5	`e5488eb0c95ded0ef7271c55328bbdb1`
BLAKE2b-256	`1b7d5fd2c4bc7b2485a39a35a2bb7b78ae1b08f10e5aa9ba6fae43d8a3550bfa`

Algorithm	Hash digest
SHA256	`510beff836487783f2780ea4c92118c26e2b15cf4a0712babe121e7a9442d40f`
MD5	`0ee36bd6ba5666abe88e42a217500681`
BLAKE2b-256	`64160bef9673999999dc854c8265eada49e06ab846a985ccc56f79223a192337`

Algorithm	Hash digest
SHA256	`2671f6a462c914c51684deaaf89b19797d1396a29e91efee09d73c71fae4ff2e`
MD5	`a999a7e52e601bc2f001c283db637689`
BLAKE2b-256	`323d7488d4d0942ab038519d020c3fb8ee1f593e7d083972849d9f1e21e4e37e`