lobster-visualization
Publication-quality plots and interactive visualizations for bioinformatics data analysis.
Installation
pip install lobster-visualization
Agents
| Agent | Description |
|---|---|
visualization_expert |
General-purpose visualization agent for creating publication-ready figures across all omics data types. |
Services
| Service | Purpose |
|---|---|
| VisualizationService | Core plotting engine with Plotly-based interactive visualizations |
Features
- UMAP plots with automatic point size scaling based on cell count
- PCA plots with variance explained annotations
- t-SNE visualizations for dimensionality reduction
- Violin plots for gene expression distribution by cluster
- Feature plots showing expression intensity on embeddings
- Dot plots for marker gene comparison across clusters
- Heatmaps with optional row and column standardization
- Elbow plots for PCA variance analysis and component selection
- Cluster composition stacked bar charts for sample contribution
- QC plots with scientific validation (skips inappropriate modalities)
- Interactive Plotly figures with zoom, pan, and hover tooltips
- Static PNG export for publication and presentation use
- Consistent color palettes across related visualizations
- Automatic figure sizing based on data dimensions
Requirements
- Python 3.12+
- lobster-ai >= 1.0.0
- plotly
Documentation
Full documentation: docs.omics-os.com/docs/agents/visualization
License
AGPL-3.0-or-later
1 maintainer
Metadata
1 maintainer
Release files for lobster-visualization 1.1.430
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | Provenance | |
|---|---|---|---|---|
| lobster_visualization-1.1.430.tar.gz | 40.4 kB | With provenance | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| lobster_visualization-1.1.430-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 81.1 kB
Release files / lobster_visualization-1.1.430.tar.gz
| Download URL | lobster_visualization-1.1.430.tar.gz |
|---|---|
| Size | 40.4 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
877ac94c0ea24c2bb14f471b24affec24d69e167a613ef3bef3acbdf2d67c307
|
|
BLAKE2b-256 checksum How to use checksums |
55a9b8573bc8dea6c3e3cfbb7c16a94e115f305cdb24e735658c4f7a65b345d4
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 21, 2026.
Transparency logRelease files / lobster_visualization-1.1.430-py3-none-any.whl
| Download URL | lobster_visualization-1.1.430-py3-none-any.whl |
|---|---|
| Size | 40.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
64971e084253ad736ca3b105b4d7565433979ac1282e29d58089b3ef6cd91e58
|
|
BLAKE2b-256 checksum How to use checksums |
a83fd4dcdbf15698ad13a79b978fb98954f9bd7fb273169ff37d19264865b3a0
|
| Upload date | |
|
Uploaded using Trusted Publishing? What is trusted publishing? |
Yes |
| Uploaded via |
twine/7.0.0 CPython/3.13.14
|
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 21, 2026.
Transparency logSecurity for lobster-visualization 1.1.430
Provenance
Provenance describes where a file came from. On PyPI, provenance is shared via attestations, which provide a verifiable record of the build or publishing details. View details, limitations and caveats.
Full provenance
All 2 files in this release have been uploaded with provenance metadata.
Attestation for lobster_visualization-1.1.430.tar.gz
PyPI Publish Attestation
PyPI verified that this artifact, at this checksum, originated from the publisher listed below.
Signed by GitHub Actions, verified by PyPI on Oct 21, 2026.
Transparency logA note on package security
PyPI is a repository for distributing packages, not a service for auditing them. While third-party security researchers and our staff do their best to detect and remove malicious packages, PyPI cannot guarantee the quality, security or suitability of any given package.
