A pipeline submission engine that parses sample inputs and submits pipelines for each sample.

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  • License: BSD License (BSD2)
  • Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro
  • Tags bioinformatics , sequencing , ngs
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Run pytests PEP compatible Code style: black

Looper is a pipeline submission engine. The typical use case is to run a bioinformatics pipeline across many different input samples. Instructions are in the documentation.

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Avatar for databio from gravatar.com databio Avatar for donaldcampbelljr from gravatar.com donaldcampbelljr Avatar for michalstolarczyk from gravatar.com michalstolarczyk Avatar for nsheff from gravatar.com nsheff

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  • License: BSD License (BSD2)
  • Author: Nathan Sheffield, Vince Reuter, Michal Stolarczyk, Johanna Klughammer, Andre Rendeiro
  • Tags bioinformatics , sequencing , ngs
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This version

2.0.1

2.0.0

2.0.0a3 pre-release

2.0.0a2 pre-release

2.0.0a1 pre-release

1.9.1

1.9.0

1.8.1

1.8.0 yanked

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1.7.1

1.7.0

1.7.0a1 pre-release

1.6.0

1.6.0a3 pre-release

1.6.0a2 pre-release

1.6.0a1 pre-release

1.5.1

1.5.0

1.4.3

1.4.2

1.4.1

1.4.0

1.3.2

1.3.1

1.3.0

1.2.1

1.2.0

1.1

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