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Username   nsheff

Date joined   Joined on Dec 12, 2017

18 projects

bulker

Last released on Sep 12, 2019

A manager for containerized executables

piper

Last released on Aug 29, 2019

A lightweight python toolkit for gluing together restartable, robust command line pipelines

logmuse

Last released on Aug 29, 2019

Logging setup

ubiquerg

Last released on Aug 27, 2019

Various utility functions

yacman

Last released on Aug 20, 2019

A standardized configuration object for reference genome assemblies

pararead

Last released on Aug 15, 2019

Parallel processing of sequencing reads

refgenie

Last released on Aug 5, 2019

Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file

refgenconf

Last released on Aug 2, 2019

A standardized configuration object for reference genome assemblies

divvy

Last released on Jul 31, 2019

A python-based configuration manager for portable environment configurations

attmap

Last released on Jul 30, 2019

Multiple access patterns for key-value reference

caravel

Last released on Jul 18, 2019

Caravel provides aweb interface to interact with your PEP-formatted projects. Caravel lets you submit jobs to any cluster resource manager, monitor jobs, summarize results, and browse project summary web pages.

loopercli

Last released on Jul 18, 2019

A pipeline submission engine that parses sample inputs and submits pipelines for each sample.

lucidoc

Last released on Jul 10, 2019

API documentation in Markdown

geofetch

Last released on Jun 21, 2019

Downloads data and metadata from GEO and SRA and creates standard PEPs.

peppy

Last released on Jun 21, 2019

A python-based project metadata manager for portable encapsulated projects

veracitools

Last released on May 24, 2019

Testing utilities

ngstk

Last released on May 19, 2019

Next-generation sequencing utility functions

eido

Last released on Mar 27, 2019

A project metadata validator

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