Plot collection for Long Read Sequencing
A collection of plots for long read sequencing FastQ files from devices like Oxford Nanopore's MinION and PromethION.
pip install --user --upgrade pandas seaborn
Note that matplot lib >= 3.0.0 is needed. Python >= 3.5 is therfore recommended, otherwise plots might be corrupted.
pip3 install --user lrplots
From the release tar.gz:
python3 setup.py install --user
With the pip3 installation it should be in your PATH and you should be able to just call:
If the command can't be found, pip3 installed it in a path that is not in your PATH variable. You can then find it with:
find ~ -name lrplot
find /usr/local -name lrplot
Then either add the containing directory to your PATH or just use the full path.
You can also call it like a script with python3 (or whatever your python3 is called):
python3 bin/lrplots example.fastq
Download the file for your platform. If you're not sure which to choose, learn more about installing packages.
|Filename, size||File type||Python version||Upload date||Hashes|
|Filename, size lrplots-0.6.1-py3-none-any.whl (8.7 kB)||File type Wheel||Python version py3||Upload date||Hashes View hashes|
|Filename, size lrplots-0.6.1.tar.gz (7.6 kB)||File type Source||Python version None||Upload date||Hashes View hashes|