lxzbiotools 0.5.5

Xingze Li's Bioinformatics Analysis Tools

Project description

lxzbiotools is a bioinformatics data processing tools.

Features

• cds2pep Convert cds file to pep
• excel2txt Convert file format form excel to txt
• fa2fq Change fasta file to fastq file
• fq2fa Change fastq file to fasta file
• genstats One or more genome informatics statistics
• gfa2fa Convert gfa file to fasta file
• gff Simplify gff3 file for WGD event analysis
• gffstat Various information statistics of genome annotation file gff
• length Get the length of each sequences
• rds Read a multi-FASTA file sequence and remove duplicates
• parallel Parallelized running tasks
• extseq Extract sequences by sequence name or keyword
• m2ofa Convert multi-line fasta to one-line fasta
• movefile Randomly allocate files to a specified number of folders

QuickStart

Install

pip3 install lxzbiotools

Update

pip3 install -U lxzbiotools

Use

$ lxzbiotools --help

 Usage: lxzbiotools.py [OPTIONS] COMMAND [ARGS]...

Version update content

• 2022-10-05 version 0.5.5 add gffstat (Various information statistics of genome annotation file gff)
• 2022-09-22 version 0.5.4 add movefile (Randomly allocate files to a specified number of folders)

Bug report

• Issues and bugs report to [e-mail]

• github: https://github.com/lxingze/lxzbiotools