malariagen_data - analyse MalariaGEN data from Python
This Python package provides methods for accessing and analysing data from MalariaGEN.
Installation
The malariagen_data Python package is available from the Python
package index (PyPI) and can be installed via pip, e.g.:
pip install malariagen-data
Documentation
Documentation of classes and methods in the public API are available from the following locations:
Release notes (change log)
See GitHub releases for release notes.
Developer setup
To get setup for development, see this video if you prefer VS Code, or this older video if you prefer PyCharm.
For detailed setup instructions, see:
- Linux setup guide
- macOS setup guide
- Windows setup guide
- Google Colab (TPU) setup guide Detailed instructions can be found in the Contributors guide.
AI use policy and guidelines
See AI use policy and guidelines for more details.
Release process
Create a new GitHub release. That's it. This will automatically trigger publishing of a new release to PyPI and a new version of the documentation via GitHub Actions.
The version switcher for the documentation can then be updated by
modifying the docs/source/_static/switcher.json file accordingly.
Citation
If you use the malariagen_data package in a publication
or include any of its functions or code in other materials (e.g. training resources),
please cite: doi.org/10.5281/zenodo.11173411
Some functions may require additional citations to acknowledge specific contributions. These are indicated in the description for each relevant function.
For any questions, please feel free to contact us at: support@malariagen.net
Sponsorship
This project is currently supported by the following grants:
This project was previously supported by the following grants:
Release files for malariagen_data 15.9.0
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| malariagen_data-15.9.0.tar.gz | 215.6 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| malariagen_data-15.9.0-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 479.1 kB
Release files / malariagen_data-15.9.0.tar.gz
| Download URL | malariagen_data-15.9.0.tar.gz |
|---|---|
| Size | 215.6 kB |
| Tags | Source |
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Release files / malariagen_data-15.9.0-py3-none-any.whl
| Download URL | malariagen_data-15.9.0-py3-none-any.whl |
|---|---|
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| Tags | Python 3 |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
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