mammos-parser

mammos-parser provides a command line tool to validate datasets generated as part of the MaMMoS project.

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Usage

The parser currently provides two features:

1. Validate a dataset: checks for the required file/directory structure according to the bundled schema.

   mammos-parser uppsala-data validate-dataset path/to/dataset
   

2. Generate derived files (result files that contain aggregated/converted raw output).

   mammos-parser uppsala-data generate-derived-files path/to/dataset
   

To see all available options run mammos-parser [subcommand] --help.

Try it in the cloud

Try mammos-parser without installing it locally by directly accessing it directly in the cloud via Binder.

Simply click the badge in the table above to get started.

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Documentation

APIs and tutorials are available in the documentation. To access the documentation, use the badge in the table above.

Installation

To install mammos-parser, you can use pip install mammos-parser inside a Python environment. For more details refer to the documentation.

How to cite

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Acknowledgements

This software has been supported by the European Union’s Horizon Europe research and innovation programme under grant agreement No 101135546 MaMMoS.