mammos-parser 0.1.0

Parse datasets from the MaMMoS project partners

mammos-parser

mammos-parser provides a command line tool to validate datasets generated as part of the MaMMoS project.

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Usage

The parser currently provides two features:

1. Validate a dataset: checks for the required file/directory structure according to the bundled schema.

   mammos-parser uppsala-data validate-dataset path/to/dataset
   

2. Generate derived files (result files that contain aggregated/converted raw output).

   mammos-parser uppsala-data generate-derived-files path/to/dataset
   

To see all available options run mammos-parser [subcommand] --help.

Try it in the cloud

Try mammos-parser without installing it locally by directly accessing it directly in the cloud via Binder.

Simply click the badge in the table above to get started.

Sessions are temporary and may time out after a period of inactivity, and any files created or modified during your session will not be saved. To avoid losing your work, please remember to download any files you create or edit before your session ends.

Documentation

APIs and tutorials are available in the documentation. To access the documentation, use the badge in the table above.

Installation

To install mammos-parser, you can use pip install mammos-parser inside a Python environment. For more details refer to the documentation.

How to cite

TODO

Acknowledgements

This software has been supported by the European Union’s Horizon Europe research and innovation programme under grant agreement No 101135546 MaMMoS.