Masato
Masato is a modular amplicon sequencing analysis tookit. It highlights transparent and composible command line interface that helps users assemble and understand their pipeline.
NOTE: This package is renamed from easy_amplicon. The old repository has been archived.
Try in Colab
Thie Colab notebook demonstrates basic usage of the package, example data included.
Preprocessing
Primers
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16SV4
Fwd (2+19bp) GTGTGYCAGCMGCCGCGGTAA └┘└─────────────────┘ Linker 16SV4-515F-Y Rev (2+20bp) CCGGACTACNVGGGTWTCTAAT └┘└──────────────────┘ Linker 16SV4-515R-B -
16SV3V4
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16SV4V5
A note about the fesibility of pair merging
1 maintainer
Metadata
1 maintainer
Release files for masato 1.6.2
For a detailed explanation of source distributions (sdists) and built distributions (wheels), please see the package formats documentation.
Source distribution (sdist)
| File | Size | Uploaded | |
|---|---|---|---|
| masato-1.6.2.tar.gz | 458.8 kB | Details |
Built distribution (wheel)
| File | Interpreter | ABI | Platform | Reset |
|---|---|---|---|---|
| masato-1.6.2-py3-none-any.whl | Python 3 | none | any | Details |
Total release size: 574.4 kB
Release files / masato-1.6.2.tar.gz
| Download URL | masato-1.6.2.tar.gz |
|---|---|
| Size | 458.8 kB |
| Tags | Source |
|
SHA-256 checksum How to use checksums |
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BLAKE2b-256 checksum How to use checksums |
f257e5c7076a79723beadd1908dccef6d328ba90d1424f21165c5735c3323dba
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.7.15
|
Release files / masato-1.6.2-py3-none-any.whl
| Download URL | masato-1.6.2-py3-none-any.whl |
|---|---|
| Size | 115.7 kB |
| Tags | Python 3 |
|
SHA-256 checksum How to use checksums |
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|
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BLAKE2b-256 checksum How to use checksums |
c80216eb0b777afe92034851f28c4cb20786614230c4cf4f2078a65a296c33ab
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| Upload date | |
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Uploaded using Trusted Publishing? What is trusted publishing? |
No |
| Uploaded via |
uv/0.7.15
|
