Masato
Masato is a modular amplicon sequencing analysis tookit. It highlights transparent and composible command line interface that helps users assemble and understand their pipeline.
NOTE: This package is renamed from easy_amplicon. The old repository has been archived.
Try in Colab
Thie Colab notebook demonstrates basic usage of the package, example data included.
Preprocessing
Primers
-
16SV4
Fwd (2+19bp) GTGTGYCAGCMGCCGCGGTAA └┘└─────────────────┘ Linker 16SV4-515F-Y Rev (2+20bp) CCGGACTACNVGGGTWTCTAAT └┘└──────────────────┘ Linker 16SV4-515R-B -
16SV3V4
-
16SV4V5
A note about the fesibility of pair merging
1 maintainer
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