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maskel
Simon Wittmann, Dominik Pysch, Anna Möller

PyPI version Python version License

Skeletonization and graph-based feature extraction for branching biological structures — vasculature, fibers, neurites, and other network-like objects — from 2D or 3D binary or multi-label segmentation masks.

Maskel is the core algorithm package: thinning, feature extraction, and the batch CLI. For the napari plugin, see napari-maskel. For benchmarks and the HRF-based analysis notebooks, see maskel-evaluations.

Full documentation: https://bionetslab.github.io/maskel/

License

Maskel is released under the MIT License. See LICENSE for details.

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Release files for maskel 2.0.1

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2.0.2

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This release

2.0.1 This release

2 release files

2.0.0

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1.1.3

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1.1.2

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1.1.1

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1.1.0

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1.0.1

2 release files

1.0.0

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0.1.1

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